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Pull requests: nf-core/modules

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Pull requests list

Update pre-commit hook python-jsonschema/check-jsonschema to v0.37.1 size/xs
#11101 opened Apr 1, 2026 by renovate bot Loading…
2 tasks
Update pre-commit hook astral-sh/ruff-pre-commit to v0.15.8 size/xs
#11100 opened Apr 1, 2026 by renovate bot Loading…
2 tasks
Update dependency askimed/nf-test to v0.9.5 size/xs
#11099 opened Apr 1, 2026 by renovate bot Loading…
2 tasks
new module: vcfpartition Ready for Review
#11098 opened Mar 31, 2026 by camlloyd Loading…
11 of 17 tasks
1
Add new module comet
#11096 opened Mar 31, 2026 by julianu Loading…
14 tasks done
9
add dds/createproject new module Adding a new module
#11094 opened Mar 31, 2026 by annaasklof • Draft
17 tasks
1
1
fix(merqury): make optional spectra fl and st png outputs
#11093 opened Mar 31, 2026 by MohineTAlam Loading…
8 of 17 tasks
6
Bump delly call
#11080 opened Mar 27, 2026 by bagnacan Loading…
4 tasks done
4
feat: civicpy/annotate module
#11079 opened Mar 27, 2026 by emmcauley Loading…
5 of 17 tasks
1
1
add batch testing
#11071 opened Mar 27, 2026 by mashehu Loading…
Update cellranger multi module to comply to nf-core guidelines
#11066 opened Mar 27, 2026 by mahesh-panchal • Draft
2 of 17 tasks
tabix/tabix: update module to support region-based VCF extraction
#11064 opened Mar 27, 2026 by luisas Loading…
12 of 17 tasks
21
Add snpclustering subworkflow
#11059 opened Mar 26, 2026 by dbaku42 Loading…
3 tasks done
Anarcii
#11058 opened Mar 26, 2026 by Clara0611 Loading…
12 of 14 tasks
1
8
New modules: Llamacpp-python/run and huggingface/download for allowing to run simple text workloads with local LLMs new module Adding a new module Ready for Review
#11053 opened Mar 26, 2026 by toniher Loading…
13 of 17 tasks
Bump CuteSV version
#11052 opened Mar 26, 2026 by awgymer Loading…
17 tasks
1
Masurca container-issue help wanted Extra attention is needed
#11049 opened Mar 25, 2026 by LiaOb21 • Draft
17 tasks
1
10
Update module ctree Ready for Review
#11043 opened Mar 25, 2026 by valerianilucrezia Loading…
5 tasks done
1
Update pairtools to 1.1.3 and migrating to topic version
#11039 opened Mar 25, 2026 by birkiy Loading…
9
Big slice imp modules
#11034 opened Mar 24, 2026 by SkyLexS Loading…
9 of 14 tasks
9
Update to topics chromap/chromap
#11025 opened Mar 23, 2026 by LouisLeNezet Loading…
17 tasks
1
@LouisLeNezet
2
New module: exomiser/analyse size/m
#11023 opened Mar 23, 2026 by matthdsm • Draft
17 tasks
@matthdsm
16
add fgumi sort/zipper modules size/m
#11017 opened Mar 23, 2026 by matthdsm • Draft
17 tasks
@matthdsm
1
UNZIP: modernize to latest nf-core conventions
#11014 opened Mar 22, 2026 by maxcumminsandfred-lab Loading…
10 of 14 tasks
1
Add module for Circlator (all) new module Adding a new module
#11013 opened Mar 22, 2026 by cwoodside1278 Loading…
11 of 14 tasks
1
@cwoodside1278
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